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论著.生物信息技术 | 更新时间:2024-04-25
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基于网络药理学和分子对接技术探讨三七⁃淫羊藿治疗股骨头坏死的作用机制
Mechanism of Sanqi⁃Epimrdii herba for the treatment of osteonecrosis of the femoral head: an exploration based on network pharmacology and molecular docking technique

广西医学 页码:112-121

作者机构:丰哲,博士,主任医师,研究方向为中医药防治骨关节疾病、骨肿瘤研究。

基金信息:国家自然科学基金(82260944);广西重点研发计划项目(2021AB09011);广西中医药大学研究生教育创新计划项目(YCBXJ2023006)

DOI:10.11675/j.issn.0253⁃4304.2024.01.18

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目的 运用网络药理学和分子对接技术探究三七⁃淫羊藿治疗股骨头坏死(ONFH)的作用机制。方法 通过中药系统药理学数据库与分析平台筛选三七⁃淫羊藿的活性成分及其作用靶点,利用GeneCards®数据库、OMIM®数据库筛选ONFH的相关靶点,取交集后获得三七⁃淫羊藿治疗ONFH的潜在作用靶点。通过Cytoscape软件构建药物⁃活性成分⁃作用靶点网络,筛选关键活性成分。通过STRING数据库和Cytoscape软件构建蛋白⁃蛋白相互作用网络,筛选核心靶点。使用DAVID数据库对潜在作用靶点进行功能富集分析和通路富集分析。最后,对关键活性成分与核心靶点蛋白进行分子对接验证。结果 最终获得三七⁃淫羊藿活性成分30个及其作用靶点214个,ONFH的相关靶点2 112个。取交集后得到三七⁃淫羊藿治疗ONFH的潜在作用靶点131个。槲皮素、木犀草素、山柰酚、脱水淫羊藿素为三七⁃淫羊藿治疗ONFH的关键活性成分,蛋白激酶B1、血管内皮生长因子A、原癌基因c⁃Jun、肿瘤蛋白p53、白细胞介素1β为三七⁃淫羊藿治疗ONFH的核心靶点。三七⁃淫羊藿治疗ONFH的潜在作用靶点主要涉及对脂多糖的反应、对外来刺激的反应、细胞缺氧反应等生物过程,以及白细胞介素17信号通路、丝裂原活化蛋白激酶信号通路、糖尿病并发症中的晚期糖基化终末产物⁃晚期糖基化终末产物受体信号通路、磷脂酰肌醇3⁃激酶/蛋白激酶B信号通路等信号通路。分子对接结果显示,关键活性成分与核心靶点蛋白均具有较好的结合活性(结合能≤-5 kcal/mol)。结论 三七⁃淫羊藿治疗ONFH的作用机制可能与调控免疫⁃炎症反应、调控破骨细胞与成骨细胞的凋亡和分化、改善血运等有关。

Objective To explore the mechanism of Sanqi⁃Epimrdii herba for the treatment of osteonecrosis of the femoral head (ONFH) by using the network pharmacology and molecular docking technique. Methods The active components and their effect targets of Sanqi⁃Epimrdii herba were screened by the Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform. The GeneCards􀳏 and OMIM􀳏 databases were used to screen targets related to ONFH. After obtaining intersection, the potential effect targets of Sanqi⁃Epimrdii herba for the treatment of ONFH were acquired. The drugs⁃active components⁃effect targets network was established by the Cytoscape software, and the key active components were screened. The protein⁃protein interaction network was established by the STRING database and Cytoscape software for screening the core targets. The DAVID database was employed to perform functional enrichment analysis and pathway enrichment analysis on potential effect targets. Finally, the molecular docking validation was performed on the key active components and core target proteins. Results A total of 30 active components and 214 effect targets of Sanqi⁃Epimrdii herba were eventually obtained, concerning 2112 targets related to ONFH. After obtaining intersection, there were 131 potential effect targets of Sanqi⁃Epimrdii herba for the treatment of ONFH. Quercetin, luteolin, kaempferol, anhydroicaritin were the key active components of Sanqi⁃Epimrdii herba for the treatment of ONFH, and protein kinase B1, vascular endothelial growth factor A, proto⁃oncogene c⁃Jun, tumor protein p53, and interleukin 1β were the core targets of Sanqi⁃Epimrdii herba for the treatment of ONFH. The potential effect targets of Sanqi⁃Epimrdii herba for the treatment of ONFH were mainly involved in biological processes such as response to lipopolysaccharide, response to external irritant, and response to cell hypoxia, and involved in signaling pathways in terms of interleukin 17 signaling pathway, mitogen activated protein kinase signaling pathway, advanced glycation end products⁃receptor for advanced glycation end products signaling pathway in diabetic complications, phosphoinositide 3⁃kinase/protein kinase B signaling pathway, etc. The results of molecular docking revealed that the key active components exerted favorable binding activity with the core target proteins (binding energy≤-5 kcal/mol). Conclusion The mechanism of Sanqi⁃Epimrdii herba for the treatment of ONFH may be related to response to immune⁃inflammation, regulation of apoptosis and differentiation of osteoclasts and osteoblasts, and blood supply improvement, etc.

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